Download MendeleyCrystal structure of extracellular ligand-binding receptor from Verminephrobacter eiseniae ef01-2
Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural GenomicsTo be published.
4M88
Crystal structure of extracellular ligand-binding receptor from Verminephrobacter eiseniae ef01-2
- PDB DOI: https://doi.org/10.2210/pdb4M88/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Verminephrobacter eiseniae EF01-2
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-08-13 Released: 2013-11-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.209
- R-Value Work: 0.172
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Extracellular ligand-binding receptor | 357 | Verminephrobacter eiseniae EF01-2 | Mutation(s): 0 Gene Names: Veis_2660 |  | |
UniProt | |||||
Find proteins for A1WL96 (Verminephrobacter eiseniae (strain EF01-2)) Explore A1WL96 Go to UniProtKB: A1WL96 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1WL96 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A], D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.209
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.076 | α = 90 |
| b = 95.81 | β = 111.56 |
| c = 50.3 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| MLPHARE | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2013-11-06 Deposition Author(s): Wu, R., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics, Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-11-06
Type: Initial release - Version 1.1: 2013-12-04
Changes: Data collection - Version 1.2: 2013-12-18
Changes: Structure summary - Version 1.3: 2018-01-24
Changes: Database references
