Download MendeleyThe crystal structure of a possible an iron-binding (periplasmic solute-binding) protein from Staphylococcus epidermidis ATCC 12228.
Tan, K., Li, H., Clancy, S., Joachimiak, A.To be published.
4M7O
The crystal structure of a possible an iron-binding (periplasmic solute-binding) protein from Staphylococcus epidermidis ATCC 12228.
- PDB DOI: https://doi.org/10.2210/pdb4M7O/pdb
- Classification: Iron binding protein
- Organism(s): Staphylococcus epidermidis ATCC 12228
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-08-12 Released: 2013-08-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.227
- R-Value Work: 0.180
- R-Value Observed: 0.183
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Iron-binding protein | 278 | Staphylococcus epidermidis ATCC 12228 | Mutation(s): 0 Gene Names: SE_0383 |  | |
UniProt | |||||
Find proteins for A0A0H2VHB1 (Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)) Explore A0A0H2VHB1 Go to UniProtKB: A0A0H2VHB1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H2VHB1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 Å
- R-Value Free: 0.227
- R-Value Work: 0.180
- R-Value Observed: 0.183
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 154.052 | α = 90 |
| b = 48.173 | β = 102.74 |
| c = 44.916 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2013-08-28 Deposition Author(s): Tan, K., Li, H., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-08-28
Type: Initial release
