Download MendeleyCrystal structure of putative ketosteroid isomerase from Kribbella flavida DSM 17836
Chang, C., Chhor, G., Endres, M., Joachimiak, A.To be published.
4LMI
Crystal structure of putative ketosteroid isomerase from Kribbella flavida DSM 17836
- PDB DOI: https://doi.org/10.2210/pdb4LMI/pdb
- Classification: Structural genomics, unknown function
- Organism(s): Kribbella flavida DSM 17836
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-07-10 Released: 2013-07-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.210
- R-Value Work: 0.158
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 139 | Kribbella flavida DSM 17836 | Mutation(s): 0 Gene Names: Kfla_6894 |  | |
UniProt | |||||
Find proteins for D2Q2I7 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)) Explore D2Q2I7 Go to UniProtKB: D2Q2I7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2Q2I7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | C [auth A], D [auth B] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.210
- R-Value Work: 0.158
- R-Value Observed: 0.161
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.536 | α = 90 |
| b = 69.873 | β = 90 |
| c = 94.809 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SHELXDE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2013-07-31 Deposition Author(s): Chang, C., Chhor, G., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-07-31
Type: Initial release - Version 1.1: 2013-08-21
Changes: Database references, Structure summary
