4LFH
Crystal Structure of 9C2 TCR
- PDB DOI: https://doi.org/10.2210/pdb4LFH/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2013-06-26 Released: 2013-10-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.238 
- R-Value Work: 0.187 
- R-Value Observed: 0.189 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
9C2 TCR delta chain | A [auth D] | 236 | Homo sapiens | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q6PJ56 (Homo sapiens) Explore Q6PJ56  Go to UniProtKB:  Q6PJ56 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6PJ56 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
9C2 TCR gamma chain | B [auth G] | 251 | Homo sapiens | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0CF51 (Homo sapiens) Explore P0CF51  Go to UniProtKB:  P0CF51 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CF51 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ACT Query on ACT | D [auth G] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
NA Query on NA | E [auth G], F [auth G] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.238 
- R-Value Work: 0.187 
- R-Value Observed: 0.189 
- Space Group: P 42 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 118.534 | α = 90 |
b = 118.534 | β = 90 |
c = 89.127 | γ = 90 |
Software Name | Purpose |
---|---|
SCALA | data scaling |
PHASER | phasing |
BUSTER-TNT | refinement |
PDB_EXTRACT | data extraction |
Blu-Ice | data collection |
XDS | data reduction |
BUSTER | refinement |
Entry History 
Deposition Data
- Released Date: 2013-10-02  Deposition Author(s): Uldrich, A.P., Le Nours, J., Pellicci, D.G., Gras, S., Rossjohn, J., Godfrey, D.I.
Revision History (Full details and data files)
- Version 1.0: 2013-10-02
Type: Initial release - Version 1.1: 2013-10-16
Changes: Database references - Version 1.2: 2013-11-06
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-20
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary