Download MendeleyThe crystal structure of a rhamnose ABC transporter, periplasmic rhamnose-binding protein from Kribbella flavida DSM 17836
Tan, K., Hatzos-Skintges, C., Endres, M., Joachimiak, A.To be published.
4KVF
The crystal structure of a rhamnose ABC transporter, periplasmic rhamnose-binding protein from Kribbella flavida DSM 17836
- PDB DOI: https://doi.org/10.2210/pdb4KVF/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Kribbella flavida DSM 17836
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-05-22 Released: 2013-06-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.209
- R-Value Work: 0.178
- R-Value Observed: 0.180
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Rhamnose ABC transporter, periplasmic rhamnose-binding protein | 342 | Kribbella flavida DSM 17836 | Mutation(s): 0 Gene Names: Kfla_0259 |  | |
UniProt | |||||
Find proteins for D2PT67 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)) Explore D2PT67 Go to UniProtKB: D2PT67 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2PT67 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.209
- R-Value Work: 0.178
- R-Value Observed: 0.180
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.274 | α = 90 |
| b = 78.451 | β = 90 |
| c = 49.705 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2013-06-05 Deposition Author(s): Tan, K., Hatzos-Skintges, C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-06-05
Type: Initial release
