Download MendeleyC-terminal domain of SdbC protein from Legionella pneumophila.
Osipiuk, J., Evdokimova, E., Savchenko, A., Joachimiak, A.To be published.
4KSN
C-terminal domain of SdbC protein from Legionella pneumophila.
- PDB DOI: https://doi.org/10.2210/pdb4KSN/pdb
- Classification: Structural Genomics, Unknown Function
- Organism(s): Legionella pneumophila subsp. pneumophila str. Philadelphia 1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2013-05-17 Released: 2013-06-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.225
- R-Value Work: 0.188
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SdbC | 78 | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 | Mutation(s): 1 Gene Names: lpg2391, sdbC |  | |
UniProt | |||||
Find proteins for Q5ZSX5 (Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)) Explore Q5ZSX5 Go to UniProtKB: Q5ZSX5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5ZSX5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UNL Query on UNL | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | Unknown ligand | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.86 Å
- R-Value Free: 0.225
- R-Value Work: 0.188
- R-Value Observed: 0.190
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M34KSN
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.24 | α = 90 |
| b = 57.928 | β = 121.78 |
| c = 81.448 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2013-06-19 Deposition Author(s): Osipiuk, J., Evdokimova, E., Savchenko, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-06-19
Type: Initial release
