Download MendeleyABC transporter, LacI family transcriptional regulator from Brachyspira murdochii
Osipiuk, J., Joachimiak, G., Clancy, S., Joachimiak, A.To be published.
4KQC
ABC transporter, LacI family transcriptional regulator from Brachyspira murdochii
- PDB DOI: https://doi.org/10.2210/pdb4KQC/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Brachyspira murdochii DSM 12563
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-05-14 Released: 2013-05-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.188
- R-Value Work: 0.151
- R-Value Observed: 0.153
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Periplasmic binding protein/LacI transcriptional regulator | 319 | Brachyspira murdochii DSM 12563 | Mutation(s): 0 Gene Names: Bmur_2490 |  | |
UniProt | |||||
Find proteins for D5U661 (Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150)) Explore D5U661 Go to UniProtKB: D5U661 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D5U661 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NO3 Query on NO3 | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.188
- R-Value Work: 0.151
- R-Value Observed: 0.153
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M34KQC
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.356 | α = 90 |
| b = 59.241 | β = 102.9 |
| c = 65.454 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2013-05-29 Deposition Author(s): Osipiuk, J., Joachimiak, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-05-29
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description
