Download MendeleyTo be published
DuBois, R.M., Zaraket, H., Reddivari, M., Coop, T., Heath, R.J., White, S.W., Russell, C.J.To be published.
4JUK
Crystal structure of H5N1 influenza virus hemagglutinin, clade 2.3.2.1
- PDB DOI: https://doi.org/10.2210/pdb4JUK/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/common magpie/Hong Kong/5052/2007(H5N1))
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2013-03-25 Released: 2014-05-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.264
- R-Value Work: 0.229
- R-Value Observed: 0.231
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemagglutinin HA1 | 329 | Influenza A virus (A/common magpie/Hong Kong/5052/2007(H5N1)) | Mutation(s): 0 Gene Names: HA, hemagglutinin |  | |
UniProt | |||||
Find proteins for B7NWR4 (Influenza A virus) Explore B7NWR4 Go to UniProtKB: B7NWR4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B7NWR4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hemagglutinin HA2 | 182 | Influenza A virus (A/common magpie/Hong Kong/5052/2007(H5N1)) | Mutation(s): 0 Gene Names: HA, hemagglutinin |  | |
UniProt | |||||
Find proteins for B7NWR4 (Influenza A virus) Explore B7NWR4 Go to UniProtKB: B7NWR4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B7NWR4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | D [auth A], E [auth A], F [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| SO4 Query on SO4 | C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.264
- R-Value Work: 0.229
- R-Value Observed: 0.231
- Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 116.365 | α = 90 |
| b = 116.365 | β = 90 |
| c = 134.596 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2014-05-07 Deposition Author(s): DuBois, R.M., Zaraket, H., Reddivari, M., Coop, T., Heath, R.J., White, S.W., Russell, C.J.
Revision History (Full details and data files)
- Version 1.0: 2014-05-07
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2023-09-20
Changes: Data collection, Database references, Refinement description, Structure summary
