Download MendeleyCrystal structure of Hoch_4089 protein from Haliangium ochraceum
Michalska, K., Mack, J.C., Endres, M., Joachimiak, A.To be published.
4I66
Crystal structure of Hoch_4089 protein from Haliangium ochraceum
- PDB DOI: https://doi.org/10.2210/pdb4I66/pdb
- Classification: Structural Genomics, Unknown Function
- Organism(s): Haliangium ochraceum DSM 14365
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-11-29 Released: 2013-02-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.198
- R-Value Work: 0.159
- R-Value Observed: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein Hoch_4089 | 209 | Haliangium ochraceum DSM 14365 | Mutation(s): 0 Gene Names: Hoch_4089 |  | |
UniProt | |||||
Find proteins for D0LJL3 (Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)) Explore D0LJL3 Go to UniProtKB: D0LJL3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D0LJL3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.198
- R-Value Work: 0.159
- R-Value Observed: 0.160
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.185 | α = 90 |
| b = 58.185 | β = 90 |
| c = 94.779 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELX | model building |
| MLPHARE | phasing |
| DM | model building |
| BUCCANEER | model building |
| ARP/wARP | model building |
| Coot | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| DM | phasing |
| BUCCANEER | phasing |
Entry History
Deposition Data
- Released Date: 2013-02-13 Deposition Author(s): Michalska, K., Mack, J.C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-02-13
Type: Initial release
