Download MendeleyCrystal Structure of the Immunoglobulin variable domain of Nectin-2 in monoclinic form
Ramagopal, U.A., Samanta, D., Nathenson, S.G., Almo, S.C.To be published.
4HZA
Crystal Structure of the Immunoglobulin variable domain of Nectin-2 in monoclinic form
- PDB DOI: https://doi.org/10.2210/pdb4HZA/pdb
- Classification: CELL ADHESION
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-11-14 Released: 2013-01-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.226
- R-Value Work: 0.186
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Poliovirus receptor-related protein 2 | 128 | Homo sapiens | Mutation(s): 0 Gene Names: HVEB, PRR2, PVRL2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q92692 (Homo sapiens) Explore Q92692 Go to UniProtKB: Q92692 | |||||
PHAROS: Q92692 GTEx: ENSG00000130202 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92692 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.226
- R-Value Work: 0.186
- R-Value Observed: 0.188
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.907 | α = 90 |
| b = 49.261 | β = 116.98 |
| c = 51.867 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2013-01-30 Deposition Author(s): Ramagopal, U.A., Samanta, D., Nathenson, S.G., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Revision History (Full details and data files)
- Version 1.0: 2013-01-30
Type: Initial release - Version 1.1: 2013-02-06
Changes: Structure summary - Version 1.2: 2023-09-20
Changes: Data collection, Database references, Refinement description
