Download MendeleyCrystal structure of a phosphoglycerate oxidoreductase from rhizobium etli
Kumaran, D., Almo, S.C., Swaminathan, S.To be published.
4HY3
Crystal structure of a phosphoglycerate oxidoreductase from rhizobium etli
- PDB DOI: https://doi.org/10.2210/pdb4HY3/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Rhizobium etli CFN 42
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-11-12 Released: 2012-12-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.291
- R-Value Work: 0.204
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| phosphoglycerate oxidoreductase | 365 | Rhizobium etli CFN 42 | Mutation(s): 0 Gene Names: RHE_PB00144 |  | |
UniProt | |||||
Find proteins for Q2K273 (Rhizobium etli (strain CFN 42 / ATCC 51251)) Explore Q2K273 Go to UniProtKB: Q2K273 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2K273 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.291
- R-Value Work: 0.204
- R-Value Observed: 0.208
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.733 | α = 90 |
| b = 121.118 | β = 101.4 |
| c = 106.652 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXD | phasing |
| SHELXE | model building |
| ARP/wARP | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-12-12 Deposition Author(s): Kumaran, D., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2012-12-12
Type: Initial release
