Download MendeleyCrystal structure of nicotinate phosphoribosyltransferase (target NYSGR-026035) from Vibrio cholerae
Mulichak, A.M., Sauder, J.M., Keefe, L.J., Burley, S.K., Almo, S.C.To be published.
4HL7
Crystal structure of nicotinate phosphoribosyltransferase (target NYSGR-026035) from Vibrio cholerae
- PDB DOI: https://doi.org/10.2210/pdb4HL7/pdb
- Classification: TRANSFERASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-10-16 Released: 2012-11-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.201
- R-Value Work: 0.161
- R-Value Observed: 0.163
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nicotinate phosphoribosyltransferase | 446 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0 Gene Names: pncB, VC_A0098 EC: 2.4.2.11 |  | |
UniProt | |||||
Find proteins for Q9KN67 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KN67 Go to UniProtKB: Q9KN67 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KN67 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth B], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.201
- R-Value Work: 0.161
- R-Value Observed: 0.163
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 83.42 | α = 90 |
| b = 147.64 | β = 90 |
| c = 74.77 | γ = 90 |
| Software Name | Purpose |
|---|---|
| JDirector | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2012-11-14 Deposition Author(s): Mulichak, A.M., Sauder, J.M., Keefe, L.J., Burley, S.K., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2012-11-14
Type: Initial release - Version 1.1: 2018-11-21
Changes: Data collection, Structure summary - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2023-09-20
Changes: Data collection, Database references, Refinement description - Version 1.4: 2023-12-06
Changes: Data collection
