Download MendeleyCrystal structure of Kfla4162 protein from Kribbella flavida (CASP Target)
Michalska, K., Chhor, G., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
4GB5
Crystal structure of Kfla4162 protein from Kribbella flavida
- PDB DOI: https://doi.org/10.2210/pdb4GB5/pdb
- Classification: Structural Genomics, Unknown Function
- Organism(s): Kribbella flavida DSM 17836
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-07-26 Released: 2012-09-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.180
- R-Value Work: 0.144
- R-Value Observed: 0.146
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 159 | Kribbella flavida DSM 17836 | Mutation(s): 0 Gene Names: Kfla_4162 |  | |
UniProt | |||||
Find proteins for D2PTS5 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)) Explore D2PTS5 Go to UniProtKB: D2PTS5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2PTS5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | C [auth A], D [auth A], E [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | B [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.55 Å
- R-Value Free: 0.180
- R-Value Work: 0.144
- R-Value Observed: 0.146
- Space Group: P 63
- Diffraction Data: https://doi.org/10.18430/M34GB5
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.948 | α = 90 |
| b = 57.948 | β = 90 |
| c = 81.605 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELX | model building |
| MLPHARE | phasing |
| DM | model building |
| ARP/wARP | model building |
| Coot | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2012-09-26 Deposition Author(s): Michalska, K., Chhor, G., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2012-09-26
Type: Initial release
