Download MendeleyStructural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides
Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.To be published.
4FSJ
Crystal structure of the virus like particle of Flock House virus
- PDB DOI: https://doi.org/10.2210/pdb4FSJ/pdb
- Entry: 4FSJ supersedes: 2Q26
- NAKB: 4FSJ
- Classification: VIRUS
- Organism(s): Flock House virus, Spodoptera frugiperda
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2012-06-27 Released: 2012-08-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.50 Å
- R-Value Work: 0.262
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Capsid protein beta | A, C [auth B], E [auth C] | 363 | Flock House virus | Mutation(s): 0 Gene Names: alpha, coat protein alpha EC: 3.4.23.44 |  |
UniProt | |||||
Find proteins for P12870 (Flock house virus) Explore P12870 Go to UniProtKB: P12870 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12870 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Capsid protein Gamma | B [auth D], D [auth E], F | 44 | Flock House virus | Mutation(s): 0 Gene Names: alpha, coat protein alpha |  |
UniProt | |||||
Find proteins for P12870 (Flock house virus) Explore P12870 Go to UniProtKB: P12870 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12870 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| Random cellular RNA fragments | G [auth R] | 14 | Spodoptera frugiperda |  | |
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | K [auth A], N [auth B], O [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| CA Query on CA | H [auth A], I [auth A], J [auth A], L [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | M [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.50 Å
- R-Value Work: 0.262
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 326.48 | α = 90 |
| b = 326.48 | β = 90 |
| c = 772.4 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| DENZO | data reduction |
| GLRF | phasing |
Entry History
Deposition Data
- Released Date: 2012-08-01 Deposition Author(s): Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.
- This entry supersedes: 2Q26
Revision History (Full details and data files)
- Version 1.0: 2012-08-01
Type: Initial release - Version 1.1: 2024-04-03
Changes: Data collection, Database references, Derived calculations, Refinement description
