Download MendeleyCrystal structure of periplasmic D-alanine ABC transporter from Salmonella enterica
Agarwal, R., Almo, S.C., Swaminathan, S.To be published.
4F3S
Crystal structure of periplasmic D-alanine ABC transporter from Salmonella enterica
- PDB DOI: https://doi.org/10.2210/pdb4F3S/pdb
- Entry: 4F3S supersedes: 3R39
- Classification: TRANSPORT PROTEIN
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-05-09 Released: 2012-05-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.14 Å
- R-Value Free: 0.221
- R-Value Work: 0.189
- R-Value Observed: 0.191
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative periplasmic binding protein | 255 | Salmonella enterica subsp. enterica serovar Typhimurium | Mutation(s): 0 Gene Names: STM1633 |  | |
UniProt | |||||
Find proteins for Q8ZPA3 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZPA3 Go to UniProtKB: Q8ZPA3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZPA3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| DAL Query on DAL | C [auth A] | D-ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-UWTATZPHSA-N |  | ||
| GLY Query on GLY | B [auth A] | GLYCINE C2 H5 N O2 DHMQDGOQFOQNFH-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.14 Å
- R-Value Free: 0.221
- R-Value Work: 0.189
- R-Value Observed: 0.191
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.406 | α = 90 |
| b = 80.406 | β = 90 |
| c = 187.041 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXD | phasing |
| SHELXE | model building |
| ARP/wARP | model building |
| CCP4 | model building |
| Coot | model building |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2012-05-23 Deposition Author(s): Agarwal, R., Chamala, S., Evans, B., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Siedel, R., Villigas, G., Zencheck, W., Foti, R., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
- This entry supersedes: 3R39
Revision History (Full details and data files)
- Version 1.0: 2012-05-23
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description
