Download MendeleyCrystal structure of cytochrome b562 from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Tan, K., Hatzos-Skintges, C., Jedrzejczak, R., Adkins, J., Joachimiak, A.To be published.
4ER9
Crystal structure of cytochrome b562 from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
- PDB DOI: https://doi.org/10.2210/pdb4ER9/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-04-19 Released: 2012-05-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.264
- R-Value Work: 0.224
- R-Value Observed: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Soluble cytochrome b562 | 131 | Salmonella enterica subsp. enterica serovar Typhimurium | Mutation(s): 0 Gene Names: cybC, STM4439 |  | |
UniProt | |||||
Find proteins for P63727 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P63727 Go to UniProtKB: P63727 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P63727 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | B [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.264
- R-Value Work: 0.224
- R-Value Observed: 0.226
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.388 | α = 90 |
| b = 67.388 | β = 90 |
| c = 57.189 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| RESOLVE | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2012-05-09 Deposition Author(s): Tan, K., Hatzos-Skintges, C., Jedrzejczak, R., Adkins, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Revision History (Full details and data files)
- Version 1.0: 2012-05-09
Type: Initial release - Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations
