Download MendeleyThe crystal structure of transhydrogenase from Sinorhizobium meliloti
Zhang, Z., Almo, S.C., Swaminathan, S.To be published.
4DIO
The crystal structure of transhydrogenase from Sinorhizobium meliloti
- PDB DOI: https://doi.org/10.2210/pdb4DIO/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Sinorhizobium meliloti SM11
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-01-31 Released: 2012-03-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.287
- R-Value Work: 0.232
- R-Value Observed: 0.235
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NAD(P) transhydrogenase subunit alpha part 1 | 405 | Sinorhizobium meliloti SM11 | Mutation(s): 0 Gene Names: pntAa, SM11_chr3030 EC: 1.6.1.2 |  | |
UniProt | |||||
Find proteins for F7X914 (Sinorhizobium meliloti (strain SM11)) Explore F7X914 Go to UniProtKB: F7X914 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | F7X914 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.287
- R-Value Work: 0.232
- R-Value Observed: 0.235
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.777 | α = 90 |
| b = 69.67 | β = 90 |
| c = 138.387 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| PHASER | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-03-21 Deposition Author(s): Zhang, Z., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Seidel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2012-03-21
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2023-12-06
Changes: Data collection
