Download MendeleyCrystal structure of GITRL from Oryctolagus cuniculus
Kumar, P.R., Bhosle, R., Gizzi, A., Scott Glenn, A., Chowhury, S., Hillerich, B., Seidel, R., Nathenson, S.G., Almo, S.C.To be published.
4DB5
Crystal structure of Rabbit GITRL
- PDB DOI: https://doi.org/10.2210/pdb4DB5/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Oryctolagus cuniculus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-01-13 Released: 2012-03-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.52 Å
- R-Value Free: 0.176
- R-Value Work: 0.161
- R-Value Observed: 0.161
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tumor necrosis factor ligand superfamily member 18 | 125 | Oryctolagus cuniculus | Mutation(s): 0 Gene Names: GITRL, TNFSF18 |  | |
UniProt | |||||
Find proteins for G1TIM1 (Oryctolagus cuniculus) Explore G1TIM1 Go to UniProtKB: G1TIM1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G1TIM1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| B3P Query on B3P | B [auth A] | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C11 H26 N2 O6 HHKZCCWKTZRCCL-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.52 Å
- R-Value Free: 0.176
- R-Value Work: 0.161
- R-Value Observed: 0.161
- Space Group: F 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 127.047 | α = 90 |
| b = 127.047 | β = 90 |
| c = 127.047 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2012-03-21 Deposition Author(s): Kumar, P.R., Bhosle, R., Gizzi, A., Scott Glenn, A., Chowhury, S., Hillerich, B., Seidel, R., Nathenson, S.G., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Revision History (Full details and data files)
- Version 1.0: 2012-03-21
Type: Initial release - Version 1.1: 2012-06-06
Changes: Structure summary - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
