Download MendeleyCrystal structure of putative Short-chain dehydrogenase/reductase from Sinorhizobium meliloti 1021
Malashkevich, V.N., Bhosle, R., Toro, R., Seidel, R., Almo, S.C.To be published.
4DA9
Crystal structure of putative Short-chain dehydrogenase/reductase from Sinorhizobium meliloti 1021
- PDB DOI: https://doi.org/10.2210/pdb4DA9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Sinorhizobium meliloti 1021
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-01-12 Released: 2012-01-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.231
- R-Value Work: 0.177
- R-Value Observed: 0.180
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Short-chain dehydrogenase/reductase | 280 | Sinorhizobium meliloti 1021 | Mutation(s): 0 Gene Names: R03296, SMc04391 EC: 1.1.1.100 |  | |
UniProt | |||||
Find proteins for Q92L02 (Rhizobium meliloti (strain 1021)) Explore Q92L02 Go to UniProtKB: Q92L02 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92L02 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth B], G [auth C], H [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.231
- R-Value Work: 0.177
- R-Value Observed: 0.180
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.333 | α = 90 |
| b = 126.589 | β = 90 |
| c = 127.093 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| SHELX | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-3000 | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2012-01-25 Deposition Author(s): Malashkevich, V.N., Bhosle, R., Toro, R., Seidel, R., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)
Revision History (Full details and data files)
- Version 1.0: 2012-01-25
Type: Initial release - Version 1.1: 2014-04-02
Changes: Other
