3ZYO
Crystal structure of the N-terminal leucine rich repeats and immunoglobulin domain of netrin-G ligand-3
- PDB DOI: https://doi.org/10.2210/pdb3ZYO/pdb
- Classification: CELL ADHESION
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No
- Deposited: 2011-08-24 Released: 2011-10-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.10 Å
- R-Value Free: 0.269
- R-Value Work: 0.229
- R-Value Observed: 0.230
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4B | 411 | Mus musculus | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0C192 (Mus musculus) Explore P0C192 Go to UniProtKB: P0C192 | |||||
IMPC: MGI:3027390 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0C192 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.10 Å
- R-Value Free: 0.269
- R-Value Work: 0.229
- R-Value Observed: 0.230
- Space Group: H 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 131.33 | α = 90 |
| b = 131.33 | β = 90 |
| c = 174.87 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2011-10-05 Deposition Author(s): Seiradake, E., Coles, C.H., Perestenko, P.V., Harlos, K., McIlhinney, R.A.J., Aricescu, A.R., Jones, E.Y.
Revision History (Full details and data files)
- Version 1.0: 2011-10-05
Type: Initial release - Version 1.1: 2011-10-26
Changes: Database references - Version 1.2: 2011-11-16
Changes: Database references - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.4: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary
