Download MendeleyCrystal Structures of Penicillin-Binding Protein 4 from Listeria Monocytogenes
Jeong, J.H., Kim, Y.G.To be published.
3ZG9
Crystal Structure of Penicillin-Binding Protein 4 from Listeria monocytogenes in the Cefuroxime bound form
- PDB DOI: https://doi.org/10.2210/pdb3ZG9/pdb
- Classification: PENICILLIN-BINDING PROTEIN
- Organism(s): Listeria monocytogenes
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-12-17 Released: 2014-01-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.209
- R-Value Work: 0.175
- R-Value Observed: 0.176
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PENICILLIN-BINDING PROTEIN 4 | 47 | Listeria monocytogenes | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q8Y547 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y547 Go to UniProtKB: Q8Y547 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8Y547 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PENICILLIN-BINDING PROTEIN 4 | 537 | Listeria monocytogenes | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q8Y547 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y547 Go to UniProtKB: Q8Y547 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8Y547 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DXF Query on DXF | C [auth A] | (2R)-5-[(carbamoyloxy)methyl]-2-[(1R)-1-{[(2Z)-2-(furan-2-yl)-2-(methoxyimino)acetyl]amino}-2-oxoethyl]-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid C16 H18 N4 O8 S RUUDYXYLGTZCPN-VRVPSKPHSA-N |  | ||
| GOL Query on GOL | D [auth B], E [auth B], F [auth B], G [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.209
- R-Value Work: 0.175
- R-Value Observed: 0.176
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.57 | α = 90 |
| b = 78.157 | β = 90 |
| c = 128.914 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2014-01-15 Deposition Author(s): Jeong, J.H., Kim, Y.G.
Revision History (Full details and data files)
- Version 1.0: 2014-01-15
Type: Initial release
