3V47

Classification: IMMUNE SYSTEM
Organism(s): Danio rerio, Eptatretus burgeri, Salmonella enterica subsp. enterica serovar Dublin
Expression System: Trichoplusia ni, Escherichia coli
Mutation(s): Yes

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 2.0 of the entry. See complete history.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Toll-like receptor 5b and variable lymphocyte receptor B.61 chimeric protein	A, B	455	Danio rerio, Eptatretus burgeri This entity is chimeric	Mutation(s): 6
UniProt
Find proteins for Q4G1L2 (Eptatretus burgeri) Explore Q4G1L2 Go to UniProtKB: Q4G1L2
Find proteins for B3DIN1 (Danio rerio) Explore B3DIN1 Go to UniProtKB: B3DIN1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	B3DIN1Q4G1L2
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellin	C, D	425	Salmonella enterica subsp. enterica serovar Dublin	Mutation(s): 0 Gene Names: fliC, fliC1
UniProt
Find proteins for Q06971 (Salmonella dublin) Explore Q06971 Go to UniProtKB: Q06971
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q06971
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E, F, G, H	2		N-Glycosylation	Interactions Focus chain E Focus chain F Focus chain G Focus chain H Interactions & Density Focus chain E Focus chain F Focus chain G Focus chain H
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth B] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth B]	I [auth A], J [auth A], K [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth B] Interactions & Density Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth B]

Experimental Data & Validation

Unit Cell:

Software Package:

Entry History

Deposition Author(s):

Yoon, S.I.

Version 1.0: 2012-02-29
Type: Initial release
Version 1.1: 2012-03-07
Changes: Structure summary
Version 1.2: 2017-08-02
Changes: Refinement description, Source and taxonomy
Version 1.3: 2017-11-08
Changes: Refinement description
Version 1.4: 2018-02-14
Changes: Structure summary
Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary