3V44
Crystal structure of the N-terminal fragment of zebrafish TLR5
- PDB DOI: https://doi.org/10.2210/pdb3V44/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Danio rerio, Eptatretus burgeri
- Expression System: Trichoplusia ni
- Mutation(s): Yes
- Deposited: 2011-12-14 Released: 2012-02-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.83 Å
- R-Value Free: 0.238
- R-Value Work: 0.204
- R-Value Observed: 0.206
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Toll-like receptor 5b and variable lymphocyte receptor B.61 chimeric protein | 407 | Danio rerio, Eptatretus burgeri This entity is chimeric | Mutation(s): 6 |  | |
UniProt | |||||
Find proteins for Q4G1L2 (Eptatretus burgeri) Explore Q4G1L2 Go to UniProtKB: Q4G1L2 | |||||
Find proteins for B3DIN1 (Danio rerio) Explore B3DIN1 Go to UniProtKB: B3DIN1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | B3DIN1Q4G1L2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | B [auth A], C [auth A], D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.83 Å
- R-Value Free: 0.238
- R-Value Work: 0.204
- R-Value Observed: 0.206
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.33 | α = 90 |
| b = 98.33 | β = 90 |
| c = 195.103 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-02-29 Deposition Author(s): Yoon, S.I., Hong, H., Wilson, I.A.
Revision History (Full details and data files)
- Version 1.0: 2012-02-29
Type: Initial release - Version 1.1: 2012-03-07
Changes: Structure summary - Version 1.2: 2017-08-02
Changes: Refinement description, Source and taxonomy - Version 1.3: 2017-11-08
Changes: Refinement description - Version 1.4: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary
