Download MendeleyCrystal structure of osmoporin (OmpC) loop deletion mutant: an Outer membrane protein from Salmonella typhi.
Prasanth, P., Putcha, B.K., Arockiasamy, A., Krishnaswamy, S.To be published.
3UPG
Loop deletion mutant of Salmonella typhi osmoporin (OmpC):an Outer Membrane Protein.
- PDB DOI: https://doi.org/10.2210/pdb3UPG/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium
- Expression System: Escherichia coli
- Mutation(s): No
- Membrane Protein: Yes OPMPDBTMMemProtMD
- Deposited: 2011-11-18 Released: 2012-11-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.325
- R-Value Work: 0.288
- R-Value Observed: 0.290
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane protein C | 338 | Salmonella enterica subsp. enterica serovar Typhimurium | Mutation(s): 0 Gene Names: ompC, STM2267 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P0A264 (Salmonella typhi) Explore P0A264 Go to UniProtKB: P0A264 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A264 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth A], C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A], E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.325
- R-Value Work: 0.288
- R-Value Observed: 0.290
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 115.149 | α = 90 |
| b = 115.149 | β = 90 |
| c = 216.736 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-11-28 Deposition Author(s): Prasanth, P., Putcha, B.K., Arockiasamy, A., Krishnaswamy, S.
Revision History (Full details and data files)
- Version 1.0: 2012-11-28
Type: Initial release - Version 1.1: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
