3TYR

Crystal structure of transcriptional regulator VanUg, Form I

PDB DOI: https://doi.org/10.2210/pdb3TYR/pdb
Entry: 3TYR supersedes: 3T75

Classification: TRANSCRIPTION
Organism(s): Enterococcus faecalis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2011-09-26 Released: 2011-10-12
Deposition Author(s): Stogios, P.J., Evdokimova, E., Wawrzak, Z., Dong, A., Depardieu, F., Courvalin, P., Shabalin, I., Chruszcz, M., Minor, W., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.198
R-Value Work: 0.157
R-Value Observed: 0.160

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of transcriptional regulator VanUg, Form I

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Dong, A., Depardieu, F., Courvalin, P., Shabalin, I., Chruszcz, M., Minor, W., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 20.35 kDa
Atom Count: 1,447
Modelled Residue Count: 149
Deposited Residue Count: 176
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator	A, B	88	Enterococcus faecalis	Mutation(s): 0 Gene Names: vanU, vanUG
UniProt
Find proteins for Q6WRY9 (Enterococcus faecalis) Explore Q6WRY9 Go to UniProtKB: Q6WRY9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6WRY9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.198
R-Value Work: 0.157
R-Value Observed: 0.160
Space Group: P 2₁ 2₁ 2₁
Diffraction Data: https://doi.org/10.18430/M34K5X

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 52.246	α = 90
b = 53.022	β = 90
c = 55.58	γ = 90

Software Package:

Software Name	Purpose
StructureStudio	data collection
PHENIX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-10-12

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

This entry supersedes: 3T75

Revision History (Full details and data files)

Version 1.0: 2011-10-12
Type: Initial release
Version 1.1: 2011-10-19
Changes: Other, Structure summary
Version 1.2: 2014-05-14
Changes: Database references
Version 1.3: 2022-04-13
Changes: Database references, Derived calculations, Structure summary

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Help and Resources

3TYR

Crystal structure of transcriptional regulator VanUg, Form I

Crystal structure of transcriptional regulator VanUg, Form I

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)