3TXO

PKC eta kinase in complex with a naphthyridine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.196 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

2,6-Naphthyridines as potent and selective inhibitors of the novel protein kinase C isozymes.

van Eis, M.J.Evenou, J.P.Floersheim, P.Gaul, C.Cowan-Jacob, S.W.Monovich, L.Rummel, G.Schuler, W.Stark, W.Strauss, A.Matt, A.Vangrevelinghe, E.Wagner, J.Soldermann, N.

(2011) Bioorg Med Chem Lett 21: 7367-7372

  • DOI: https://doi.org/10.1016/j.bmcl.2011.10.025
  • Primary Citation of Related Structures:  
    3TXO

  • PubMed Abstract: 

    The present study describes a novel series of ATP-competitive PKC inhibitors based on the 2,6-naphthyridine template. Example compounds potently inhibit the novel Protein Kinase C (PKC) isotypes δ, ε, η, θ (in particular PKCε/η, and display a 10-100-fold selectivity over the classical PKC isotypes. The prototype compound 11 was found to inhibit PKCθ-dependent pathways in vitro and in vivo. In vitro, a-CD3/a-CD28-induced lymphocyte proliferation could be effectively blocked in 10% rat whole blood. In mice, 11 dose-dependently inhibited Staphylococcus aureus enterotoxin B-triggered IL-2 serum levels after oral dosing.


  • Organizational Affiliation

    Novartis Institutes for BioMedical Research, Forum 1, Novartis Campus, CH-4056 Basel, Switzerland. maurice.van_eis@novartis.com


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein kinase C eta type353Homo sapiensMutation(s): 1 
Gene Names: PRKCHPKCLPRKCL
EC: 2.7.11.13
UniProt & NIH Common Fund Data Resources
Find proteins for P24723 (Homo sapiens)
Explore P24723 
Go to UniProtKB:  P24723
PHAROS:  P24723
GTEx:  ENSG00000027075 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP24723
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
07U
Query on 07U

Download Ideal Coordinates CCD File 
B [auth A]2-methyl-N~1~-[3-(pyridin-4-yl)-2,6-naphthyridin-1-yl]propane-1,2-diamine
C17 H19 N5
WNDOFCPEDZYDPL-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
TPO
Query on TPO
A
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Binding Affinity Annotations 
IDSourceBinding Affinity
07U Binding MOAD:  3TXO IC50: 9 (nM) from 1 assay(s)
BindingDB:  3TXO IC50: 9 (nM) from 1 assay(s)
PDBBind:  3TXO IC50: 9 (nM) from 1 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.196 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 113.533α = 90
b = 56.861β = 90
c = 63.367γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-11-30
    Type: Initial release
  • Version 1.1: 2011-12-07
    Changes: Database references