Download MendeleyCrystal structure of a putative oligoendopeptidase F from Bacillus anthracis str. Ames
Wajerowicz, W., Onopriyenko, O., Porebski, P., Domagalski, M., Chruszcz, M., Savchenko, A., Anderson, W., Minor, W.To be published.
3SKS
Crystal structure of a putative oligoendopeptidase F from Bacillus anthracis str. Ames
- PDB DOI: https://doi.org/10.2210/pdb3SKS/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus anthracis str. Ames
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-06-23 Released: 2011-07-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.234
- R-Value Work: 0.181
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative Oligoendopeptidase F | 567 | Bacillus anthracis str. Ames | Mutation(s): 0 Gene Names: BAS1254, BA_1353, GBAA_1353 |  | |
UniProt | |||||
Find proteins for A0A6H3ACK0 (Bacillus anthracis) Explore A0A6H3ACK0 Go to UniProtKB: A0A6H3ACK0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6H3ACK0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A], C [auth A], D [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| ZN Query on ZN | E [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.234
- R-Value Work: 0.181
- R-Value Observed: 0.184
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M3X59F
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.984 | α = 90 |
| b = 84.551 | β = 90 |
| c = 116.083 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| MOLREP | phasing |
| REFMAC | refinement |
| Coot | model building |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-07-06 Deposition Author(s): Wajerowicz, W., Onopriyenko, O., Porebski, P., Domagalski, M., Chruszcz, M., Savchenko, A., Anderson, W., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2011-07-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2022-04-13
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2023-09-13
Changes: Data collection, Refinement description
