3S84

Dimeric apoA-IV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The Structure of Dimeric Apolipoprotein A-IV and Its Mechanism of Self-Association.

Deng, X.Morris, J.Dressmen, J.Tubb, M.R.Tso, P.Jerome, W.G.Davidson, W.S.Thompson, T.B.

(2012) Structure 20: 767-779

  • DOI: https://doi.org/10.1016/j.str.2012.02.020
  • Primary Citation of Related Structures:  
    3S84

  • PubMed Abstract: 

    Apolipoproteins are key structural elements of lipoproteins and critical mediators of lipid metabolism. Their detergent-like properties allow them to emulsify lipid or exist in a soluble lipid-free form in various states of self-association. Unfortunately, these traits have hampered high-resolution structural studies needed to understand the biogenesis of cardioprotective high-density lipoproteins (HDLs). We derived a crystal structure of the core domain of human apolipoprotein (apo)A-IV, an HDL component and important mediator of lipid absorption. The structure at 2.4 Å depicts two linearly connected 4-helix bundles participating in a helix swapping arrangement that offers a clear explanation for how the protein self-associates as well as clues to the structure of its monomeric form. This also provides a logical basis for antiparallel arrangements recently described for lipid-containing particles. Furthermore, we propose a "swinging door" model for apoA-IV lipid association.


  • Organizational Affiliation

    Department of Molecular Genetics, Biochemistry, and Microbiology, College of Medicine, University of Cincinnati, OH 45267, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Apolipoprotein A-IV
A, B
273Homo sapiensMutation(s): 0 
Gene Names: APOA4
UniProt & NIH Common Fund Data Resources
Find proteins for P06727 (Homo sapiens)
Explore P06727 
Go to UniProtKB:  P06727
PHAROS:  P06727
GTEx:  ENSG00000110244 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06727
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.200 
  • R-Value Observed: 0.202 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.825α = 90
b = 70.825β = 90
c = 512.383γ = 120
Software Package:
Software NamePurpose
Blu-Icedata collection
CRANKphasing
BUSTERrefinement
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-05-16
    Type: Initial release
  • Version 1.1: 2012-06-20
    Changes: Database references
  • Version 1.2: 2017-11-08
    Changes: Advisory, Refinement description
  • Version 1.3: 2024-02-28
    Changes: Advisory, Data collection, Database references, Derived calculations