Download MendeleyCrystal structure of d-mannonate dehydratase from Chromohalobacter salexigens complexed with d-arabinohydroxamate
Fedorov, A.A., Fedorov, E.V., Wichelecki, D., Gerlt, J.A., Almo, S.C.To be published.
3RGT
Crystal structure of d-mannonate dehydratase from Chromohalobacter salexigens complexed with D-Arabinohydroxamate
- PDB DOI: https://doi.org/10.2210/pdb3RGT/pdb
- Classification: LYASE
- Organism(s): Chromohalobacter salexigens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-04-09 Released: 2012-04-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.222
- R-Value Work: 0.178
- R-Value Observed: 0.180
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| D-mannonate dehydratase | 405 | Chromohalobacter salexigens | Mutation(s): 0 Gene Names: Csal_2974 EC: 4.2.1.8 |  | |
UniProt | |||||
Find proteins for Q1QT89 (Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)) Explore Q1QT89 Go to UniProtKB: Q1QT89 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1QT89 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EZ4 Query on EZ4 | F [auth A], H [auth B], J [auth C], L [auth D] | (2S,3R,4R)-2,3,4,5-tetrahydroxy-N-oxo-pentanamide C5 H9 N O6 VIMQVNVKLDVNFU-JJYYJPOSSA-N |  | ||
| CO Query on CO | E [auth A], G [auth B], I [auth C], K [auth D] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.222
- R-Value Work: 0.178
- R-Value Observed: 0.180
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 110.712 | α = 90 |
| b = 179.657 | β = 90 |
| c = 85.422 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| BALBES | phasing |
| PHENIX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2012-04-11 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Wichelecki, D., Gerlt, J.A., Almo, S.C.
Revision History (Full details and data files)
- Version 1.0: 2012-04-11
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
