3REZ
glycoprotein GPIb variant
- PDB DOI: https://doi.org/10.2210/pdb3REZ/pdb
- Classification: CELL ADHESION
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): No 
- Deposited: 2011-04-05 Released: 2012-02-15 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.259 
- R-Value Work: 0.211 
- R-Value Observed: 0.214 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Platelet glycoprotein Ib beta chain, Platelet glycoprotein IX | 129 | Homo sapiens | Mutation(s): 0  Gene Names: GP1BB, GP9 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P14770 (Homo sapiens) Explore P14770  Go to UniProtKB:  P14770 | |||||
PHAROS:  P14770 GTEx:  ENSG00000169704  | |||||
Find proteins for P13224 (Homo sapiens) Explore P13224  Go to UniProtKB:  P13224 | |||||
PHAROS:  P13224 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P14770P13224 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | E [auth A], G [auth B], J [auth C], L [auth C], O [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
MAN Query on MAN | K [auth C] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | |||
FUL Query on FUL | I [auth C] | beta-L-fucopyranose C6 H12 O5 SHZGCJCMOBCMKK-KGJVWPDLSA-N | |||
PEG Query on PEG | F [auth A] H [auth B] M [auth C] N [auth C] P [auth D] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.259 
- R-Value Work: 0.211 
- R-Value Observed: 0.214 
- Space Group: P 31 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 72.01 | α = 90 |
b = 72.01 | β = 90 |
c = 171.731 | γ = 120 |
Software Name | Purpose |
---|---|
PHASER | phasing |
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
Entry History 
Deposition Data
- Released Date: 2012-02-15  Deposition Author(s): McEwan, P.A., Yang, W., Carr, K.H., Mo, X., Zheng, X., Li, R., Emsley, J.
Revision History (Full details and data files)
- Version 1.0: 2012-02-15
Type: Initial release - Version 1.1: 2017-08-23
Changes: Advisory, Refinement description, Source and taxonomy - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Database references, Derived calculations, Structure summary