Download MendeleyThe crystal structure of ferritin from Vibrio cholerae O1 biovar El Tor str. N16961
Tan, K., Mulligan, R., Hasseman, J., Anderson, W.F., Joachimiak, A.To be published.
3QZ3
The crystal structure of ferritin from Vibrio cholerae O1 biovar El Tor str. N16961
- PDB DOI: https://doi.org/10.2210/pdb3QZ3/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2011-03-04 Released: 2011-03-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.219
- R-Value Work: 0.180
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ferritin | 184 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0 Gene Names: VC_0078 |  | |
UniProt | |||||
Find proteins for Q9KVR1 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KVR1 Go to UniProtKB: Q9KVR1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KVR1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | D [auth A], E [auth B], F [auth C], G [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.219
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: I 4 2 2
- Diffraction Data: https://doi.org/10.18430/M33QZ3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 144.96 | α = 90 |
| b = 144.96 | β = 90 |
| c = 136.921 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| MOLREP | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-03-23 Deposition Author(s): Tan, K., Mulligan, R., Hasseman, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2011-03-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-12-06
Changes: Data collection
