Download MendeleyCrystal structure of putative modulator of gyrase (PmbA) from Pseudomonas aeruginosa PAO1
Tkaczuk, K.L., Chruszcz, M., Evdokimova, E., Liu, F., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W.To be published.
3QTD
Crystal structure of putative modulator of gyrase (PmbA) from Pseudomonas aeruginosa PAO1
- PDB DOI: https://doi.org/10.2210/pdb3QTD/pdb
- Classification: GENE REGULATION
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-02-22 Released: 2011-03-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.279
- R-Value Work: 0.225
- R-Value Observed: 0.227
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PmbA protein | 449 | Pseudomonas aeruginosa | Mutation(s): 0 Gene Names: PA4472, pmbA, PmbA_TldD |  | |
UniProt | |||||
Find proteins for Q9HVU9 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HVU9 Go to UniProtKB: Q9HVU9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HVU9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | E [auth A] F [auth A] G [auth B] H [auth B] I [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.279
- R-Value Work: 0.225
- R-Value Observed: 0.227
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.385 | α = 90 |
| b = 116.201 | β = 90 |
| c = 253.968 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXE | model building |
| DM | model building |
| MLPHARE | phasing |
| RESOLVE | model building |
| CCP4 | model building |
| REFMAC | refinement |
| Coot | model building |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2011-03-30 Deposition Author(s): Tkaczuk, K.L., Chruszcz, M., Evdokimova, E., Liu, F., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-03-30
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description - Version 1.3: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
