Download Mendeleyp-nitrophenyl phosphatase from Archaeoglobus fulgidus.
Osipiuk, J., Zheng, H., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
3QGM
p-nitrophenyl phosphatase from Archaeoglobus fulgidus
- PDB DOI: https://doi.org/10.2210/pdb3QGM/pdb
- Classification: HYDROLASE
- Organism(s): Archaeoglobus fulgidus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2011-01-24 Released: 2011-02-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.213
- R-Value Work: 0.169
- R-Value Observed: 0.172
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| p-nitrophenyl phosphatase (Pho2) | 268 | Archaeoglobus fulgidus | Mutation(s): 0 Gene Names: AF_0374 |  | |
UniProt | |||||
Find proteins for O29873 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O29873 Go to UniProtKB: O29873 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O29873 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A], F [auth B], H [auth C], I [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.213
- R-Value Work: 0.169
- R-Value Observed: 0.172
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.252 | α = 74.99 |
| b = 68.843 | β = 87.33 |
| c = 70.154 | γ = 85.76 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2011-02-09 Deposition Author(s): Osipiuk, J., Zheng, H., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2011-02-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description
