3Q87

Structure of E. cuniculi Mtq2-Trm112 complex responible for the methylation of eRF1 translation termination factor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.205 

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This is version 1.4 of the entry. See complete history


Literature

Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein

Liger, D.Mora, L.Lazar, N.Figaro, S.Henri, J.Scrima, N.Buckingham, R.H.van Tilbeurgh, H.Heurgue-Hamard, V.Graille, M.

(2011) Nucleic Acids Res 

  • DOI: https://doi.org/10.1093/nar/gkr176
  • Primary Citation of Related Structures:  
    3Q87

  • PubMed Abstract: 

    Methylation is a common modification encountered in DNA, RNA and proteins. It plays a central role in gene expression, protein function and mRNA translation. Prokaryotic and eukaryotic class I translation termination factors are methylated on the glutamine of the essential and universally conserved GGQ motif, in line with an important cellular role. In eukaryotes, this modification is performed by the Mtq2-Trm112 holoenzyme. Trm112 activates not only the Mtq2 catalytic subunit but also two other tRNA methyltransferases (Trm9 and Trm11). To understand the molecular mechanisms underlying methyltransferase activation by Trm112, we have determined the 3D structure of the Mtq2-Trm112 complex and mapped its active site. Using site-directed mutagenesis and in vivo functional experiments, we show that this structure can also serve as a model for the Trm9-Trm112 complex, supporting our hypothesis that Trm112 uses a common strategy to activate these three methyltransferases.


  • Organizational Affiliation

    Institut de Biochimie et de Biophysique Moléculaire et Cellulaire, Université Paris-Sud, IFR115, CNRS UMR 8619, Orsay Cedex F-91405, France.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative uncharacterized protein ECU08_1170125Encephalitozoon cuniculiMutation(s): 0 
UniProt
Find proteins for Q8SUP0 (Encephalitozoon cuniculi (strain GB-M1))
Explore Q8SUP0 
Go to UniProtKB:  Q8SUP0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8SUP0
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
N6 adenine specific DNA methylase170Encephalitozoon cuniculiMutation(s): 0 
UniProt
Find proteins for Q8SRR4 (Encephalitozoon cuniculi (strain GB-M1))
Explore Q8SRR4 
Go to UniProtKB:  Q8SRR4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8SRR4
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.205 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.115α = 90
b = 74.316β = 90
c = 96.754γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
SHARPphasing
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-05-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2018-01-03
    Changes: Structure summary
  • Version 1.3: 2019-12-25
    Changes: Data collection, Database references, Refinement description
  • Version 1.4: 2024-03-20
    Changes: Data collection, Database references, Derived calculations