Download MendeleyMethionyl-tRNA formyltransferase from Vibrio cholerae.
Osipiuk, J., Gu, M., Papazisi, L., Anderson, W.F., Joachimiak, A.To be published.
3Q0I
Methionyl-tRNA formyltransferase from Vibrio cholerae
- PDB DOI: https://doi.org/10.2210/pdb3Q0I/pdb
- Classification: TRANSFERASE
- Organism(s): Vibrio cholerae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-12-15 Released: 2010-12-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.203
- R-Value Work: 0.176
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Methionyl-tRNA formyltransferase | 318 | Vibrio cholerae | Mutation(s): 0 Gene Names: fmt, VC_0045 EC: 2.1.2.9 |  | |
UniProt | |||||
Find proteins for Q9KVU4 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KVU4 Go to UniProtKB: Q9KVU4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KVU4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.89 Å
- R-Value Free: 0.203
- R-Value Work: 0.176
- R-Value Observed: 0.177
- Space Group: P 41 21 2
- Diffraction Data: https://doi.org/10.18430/M33Q0I
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.692 | α = 90 |
| b = 66.692 | β = 90 |
| c = 183.782 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2010-12-29 Deposition Author(s): Osipiuk, J., Gu, M., Papazisi, L., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2010-12-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description
