Download MendeleyThe crystal structure of aa putative extracellular solute-binding protein from Bordetella parapertussis
Zhang, Z., Burley, S.K., Swaminathan, S.To be published.
3PU5
The crystal structure of a putative extracellular solute-binding protein from Bordetella parapertussis
- PDB DOI: https://doi.org/10.2210/pdb3PU5/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Bordetella parapertussis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-12-03 Released: 2010-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.220
- R-Value Work: 0.180
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| extracellular solute-binding protein | 333 | Bordetella parapertussis | Mutation(s): 0 Gene Names: BPP0906 |  | |
UniProt | |||||
Find proteins for Q7W0Z9 (Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)) Explore Q7W0Z9 Go to UniProtKB: Q7W0Z9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7W0Z9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.220
- R-Value Work: 0.180
- R-Value Observed: 0.184
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.569 | α = 90 |
| b = 104.862 | β = 90 |
| c = 39.3 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SOLVE | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-12-22 Deposition Author(s): Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-12-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
