3PTW

CRYSTAL STRUCTURE OF malonyl CoA-acyl carrier protein transacylase from Clostridium perfringens Atcc 13124

PDB DOI: https://doi.org/10.2210/pdb3PTW/pdb

Classification: TRANSFERASE
Organism(s): Clostridium perfringens ATCC 13124
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-12-03 Released: 2010-12-15
Deposition Author(s): Malashkevich, V.N., Toro, R., Ramagopal, U., Seidel, R., Foti, R., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.265
R-Value Work: 0.218
R-Value Observed: 0.220

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

CRYSTAL STRUCTURE OF malonyl CoA-acyl carrier protein transacylase from Clostridium perfringens Atcc 13124

Malashkevich, V.N., Toro, R., Ramagopal, U., Seidel, R., Foti, R., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 37.13 kDa
Atom Count: 2,506
Modelled Residue Count: 316
Deposited Residue Count: 336
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Malonyl CoA-acyl carrier protein transacylase	A	336	Clostridium perfringens ATCC 13124	Mutation(s): 0 Gene Names: fabD, CPF_1325 EC: 2.3.1.39
UniProt
Find proteins for A0A0H2YQN3 (Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)) Explore A0A0H2YQN3 Go to UniProtKB: A0A0H2YQN3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H2YQN3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.265
R-Value Work: 0.218
R-Value Observed: 0.220
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.703	α = 90
b = 87.075	β = 90
c = 87.353	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
CBASS	data collection
HKL-2000	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-12-15

Deposition Author(s):

Malashkevich, V.N.

New York Structural Genomics Research Consortium (NYSGRC)

Revision History (Full details and data files)

Version 1.0: 2010-12-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.