Download MendeleyCrystal structure of D-Glucarate dehydratase from Ralstonia solanacearum complexed with Mg and D-glucarate
Fedorov, A.A., Fedorov, E.V., Gerlt, J.A., Burley, S.K., Almo, S.C.To be published.
3P0W
Crystal structure of D-Glucarate dehydratase from Ralstonia solanacearum complexed with Mg and D-glucarate
- PDB DOI: https://doi.org/10.2210/pdb3P0W/pdb
- Classification: ISOMERASE
- Organism(s): Ralstonia pickettii 12J
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-09-29 Released: 2010-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.71 Å
- R-Value Free: 0.265
- R-Value Work: 0.227
- R-Value Observed: 0.229
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mandelate racemase/muconate lactonizing protein | 470 | Ralstonia pickettii 12J | Mutation(s): 0 Gene Names: Rpic_4449 |  | |
UniProt | |||||
Find proteins for B2UIZ1 (Ralstonia pickettii (strain 12J)) Explore B2UIZ1 Go to UniProtKB: B2UIZ1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2UIZ1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GKR Query on GKR | F [auth A], H [auth B], J [auth C], L [auth D] | D-GLUCARATE C6 H8 O8 DSLZVSRJTYRBFB-LLEIAEIESA-L |  | ||
| MG Query on MG | E [auth A], G [auth B], I [auth C], K [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.71 Å
- R-Value Free: 0.265
- R-Value Work: 0.227
- R-Value Observed: 0.229
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.958 | α = 90 |
| b = 128.822 | β = 90 |
| c = 178.1 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| PHENIX | model building |
| PHENIX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2010-10-13 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Gerlt, J.A., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-10-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2024-02-21
Changes: Data collection, Database references
