Download MendeleyThe crystal structure of a putative transcriptional regulator from Vibrio parahaemolyticus
Zhang, Z., Burley, S.K., Swaminathan, S.To be published.
3OXN
The crystal structure of a putative transcriptional regulator from Vibrio parahaemolyticus
- PDB DOI: https://doi.org/10.2210/pdb3OXN/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Vibrio parahaemolyticus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-09-21 Released: 2010-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.290
- R-Value Work: 0.245
- R-Value Observed: 0.248
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative transcriptional regulator, LysR family | 241 | Vibrio parahaemolyticus | Mutation(s): 0 Gene Names: VP0027 |  | |
UniProt | |||||
Find proteins for Q87TP2 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87TP2 Go to UniProtKB: Q87TP2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q87TP2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.290
- R-Value Work: 0.245
- R-Value Observed: 0.248
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.316 | α = 86.19 |
| b = 50.488 | β = 82.89 |
| c = 108.116 | γ = 86.74 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXS | phasing |
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-10-13 Deposition Author(s): Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-10-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
