3OT1

Crystal structure of VC2308 protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.16 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.145 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme208Vibrio cholerae O1 biovar El Tor str. N16961Mutation(s): 0 
Gene Names: VC2308VC_2308
UniProt
Find proteins for Q9KPQ8 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961))
Explore Q9KPQ8 
Go to UniProtKB:  Q9KPQ8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9KPQ8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme208Vibrio cholerae O1 biovar El Tor str. N16961Mutation(s): 0 
Gene Names: VC2308VC_2308
UniProt
Find proteins for Q9KPQ8 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961))
Explore Q9KPQ8 
Go to UniProtKB:  Q9KPQ8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9KPQ8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
CSX
Query on CSX
B
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.387α = 90
b = 64.683β = 90
c = 81.592γ = 90
Software Package:
Software NamePurpose
MD2data collection
HKL-3000phasing
DMmodel building
SHELXDphasing
SHELXEmodel building
ARP/wARPmodel building
CCP4model building
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
DMphasing
CCP4phasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2010-09-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2022-04-13
    Changes: Database references, Derived calculations, Structure summary