Download MendeleyCrystal structure of a sugar-binding protein (BACOVA_04391) from Bacteroides ovatus at 2.16 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3ORJ
Crystal structure of a sugar-binding protein (BACOVA_04391) from Bacteroides ovatus at 2.16 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3ORJ/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Bacteroides ovatus ATCC 8483
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-09-07 Released: 2010-10-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.16 Å
- R-Value Free: 0.229
- R-Value Work: 0.196
- R-Value Observed: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| sugar-binding protein | 439 | Bacteroides ovatus ATCC 8483 | Mutation(s): 0 Gene Names: BACOVA_04391 |  | |
UniProt | |||||
Find proteins for A7M2Q4 (Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)) Explore A7M2Q4 Go to UniProtKB: A7M2Q4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A7M2Q4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A], E [auth A], F [auth A], G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.16 Å
- R-Value Free: 0.229
- R-Value Work: 0.196
- R-Value Observed: 0.197
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M33ORJ
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.456 | α = 90 |
| b = 71.962 | β = 90 |
| c = 120.806 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | phasing |
| BUSTER-TNT | refinement |
| XSCALE | data processing |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XSCALE | data scaling |
| SHELXD | phasing |
| autoSHARP | phasing |
| BUSTER | refinement |
Entry History
Deposition Data
- Released Date: 2010-10-13 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-10-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-07-20
Changes: Structure summary - Version 1.3: 2017-10-25
Changes: Author supporting evidence - Version 1.4: 2023-02-01
Changes: Database references, Derived calculations
