Download MendeleyThe structure of a proline dipeptidase from Streptococcus agalactiae 2603V
Fan, Y., Wu, R., Morales, J., Clancy, S., Joachimiak, A.To be published.
3OOO
The structure of a proline dipeptidase from Streptococcus agalactiae 2603V
- PDB DOI: https://doi.org/10.2210/pdb3OOO/pdb
- Classification: HYDROLASE
- Organism(s): Streptococcus agalactiae 2603V/R
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-08-31 Released: 2010-09-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.215
- R-Value Work: 0.186
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Proline dipeptidase | 132 | Streptococcus agalactiae 2603V/R | Mutation(s): 0 Gene Names: pepQ, SAG0706 |  | |
UniProt | |||||
Find proteins for Q8E0M4 (Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)) Explore Q8E0M4 Go to UniProtKB: Q8E0M4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8E0M4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.57 Å
- R-Value Free: 0.215
- R-Value Work: 0.186
- R-Value Observed: 0.188
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.744 | α = 90 |
| b = 58.325 | β = 90 |
| c = 101.995 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-09-22 Deposition Author(s): Fan, Y., Wu, R., Morales, J., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-09-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description
