Download MendeleyCrystal structure of extracellular solute-binding protein from Bifidobacterium longum subsp. infantis
Chang, C., Xu, X., Chin, S., Cui, H., Dong, A., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
3OMB
Crystal structure of extracellular solute-binding protein from Bifidobacterium longum subsp. infantis
- PDB DOI: https://doi.org/10.2210/pdb3OMB/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-08-26 Released: 2010-09-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.227
- R-Value Work: 0.151
- R-Value Observed: 0.155
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Extracellular solute-binding protein, family 1 | 535 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | Mutation(s): 0 Gene Names: Blon_2351 |  | |
UniProt | |||||
Find proteins for B7GNQ3 (Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)) Explore B7GNQ3 Go to UniProtKB: B7GNQ3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B7GNQ3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.227
- R-Value Work: 0.151
- R-Value Observed: 0.155
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.949 | α = 90 |
| b = 70.099 | β = 90 |
| c = 122.177 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| DM | phasing |
| RESOLVE | phasing |
| Coot | model building |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2010-09-08 Deposition Author(s): Chang, C., Xu, X., Chin, S., Cui, H., Dong, A., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-09-08
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
