Download MendeleyCrystal structure of tRNA-specific Adenosine deaminase from Salmonella enterica
Kim, J., Ramagopal, U.A., Burley, S.K., Almo, S.C.To be published.
3OCQ
crystal structure of tRNA-specific Adenosine deaminase from Salmonella enterica
- PDB DOI: https://doi.org/10.2210/pdb3OCQ/pdb
- Classification: HYDROLASE
- Organism(s): Salmonella enterica
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-08-10 Released: 2010-08-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.238
- R-Value Work: 0.186
- R-Value Observed: 0.189
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative Cytosine/adenosine deaminase | 183 | Salmonella enterica | Mutation(s): 0 Gene Names: SCH_2563, yfhC EC: 3.5.4.4 |  | |
UniProt | |||||
Find proteins for Q57LE3 (Salmonella choleraesuis (strain SC-B67)) Explore Q57LE3 Go to UniProtKB: Q57LE3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q57LE3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.238
- R-Value Work: 0.186
- R-Value Observed: 0.189
- Space Group: P 3 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.49 | α = 90 |
| b = 75.49 | β = 90 |
| c = 44.757 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-08-18 Deposition Author(s): Kim, J., Ramagopal, U.A., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2010-08-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Refinement description
