Download MendeleyThe crystal structure of a possilbe exported protein from Bordetella parapertussis
Tan, K., Bigelow, L., Buck, K., Joachimiak, A.To be published.
3OCJ
The crystal structure of a possilbe exported protein from Bordetella parapertussis
- PDB DOI: https://doi.org/10.2210/pdb3OCJ/pdb
- Classification: structural genomics, unknown function
- Organism(s): Bordetella parapertussis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-08-10 Released: 2010-10-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.39 Å
- R-Value Free: 0.211
- R-Value Work: 0.187
- R-Value Observed: 0.189
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative exported protein | 305 | Bordetella parapertussis | Mutation(s): 0 Gene Names: BPP1064 |  | |
UniProt | |||||
Find proteins for Q7WBE0 (Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)) Explore Q7WBE0 Go to UniProtKB: Q7WBE0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7WBE0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLM Query on PLM | D [auth A] | PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | B [auth A], C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.39 Å
- R-Value Free: 0.211
- R-Value Work: 0.187
- R-Value Observed: 0.189
- Space Group: P 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.233 | α = 90 |
| b = 49.312 | β = 90 |
| c = 145.053 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP | model building |
| WARP | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2010-10-06 Deposition Author(s): Tan, K., Bigelow, L., Buck, K., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-10-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
