Download MendeleyCrystal structure of cytidylyltransferase from Vibrio cholerae
Hattne, J., Borek, D., Grimshaw, S., Nakka, C., Rostankowski, R., Otwinowski, Z., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
3OAM
Crystal structure of cytidylyltransferase from Vibrio cholerae
- PDB DOI: https://doi.org/10.2210/pdb3OAM/pdb
- Classification: TRANSFERASE
- Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-08-05 Released: 2010-09-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.232
- R-Value Work: 0.198
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-deoxy-manno-octulosonate cytidylyltransferase | 252 | Vibrio cholerae O1 biovar El Tor str. N16961 | Mutation(s): 0 Gene Names: kdsB, VC1875, VC_1875 EC: 2.7.7.38 |  | |
UniProt | |||||
Find proteins for Q9KQX2 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KQX2 Go to UniProtKB: Q9KQX2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9KQX2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | E [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.232
- R-Value Work: 0.198
- R-Value Observed: 0.200
- Space Group: P 1
- Diffraction Data: https://doi.org/10.18430/M33OAM
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.928 | α = 82.73 |
| b = 68.209 | β = 74.19 |
| c = 71.476 | γ = 76.97 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-09-22 Deposition Author(s): Hattne, J., Borek, D., Grimshaw, S., Nakka, C., Rostankowski, R., Otwinowski, Z., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2010-09-22
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
