Download MendeleyCrystal structure of an ADP-ribose pyrophosphatase (SSU98_1448) from STREPTOCOCCUS SUIS 89-1591 at 2.27 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3O8S
Crystal structure of an ADP-ribose pyrophosphatase (SSU98_1448) from STREPTOCOCCUS SUIS 89-1591 at 2.27 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3O8S/pdb
- Classification: HYDROLASE
- Organism(s): Streptococcus suis 89/1591
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-08-03 Released: 2010-08-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.218
- R-Value Work: 0.191
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ADP-ribose pyrophosphatase | 206 | Streptococcus suis 89/1591 | Mutation(s): 0 Gene Names: SsuiDRAFT_3457 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | G [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 Å
- R-Value Free: 0.218
- R-Value Work: 0.191
- R-Value Observed: 0.193
- Space Group: P 43 2 2
- Diffraction Data: https://doi.org/10.18430/M33O8S
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.78 | α = 90 |
| b = 64.78 | β = 90 |
| c = 108.29 | γ = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER-TNT | refinement |
| XSCALE | data processing |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XSCALE | data scaling |
| Rosetta | phasing |
| PHASER | phasing |
| BUSTER | refinement |
Entry History
Deposition Data
- Released Date: 2010-08-25 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-08-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2011-07-20
Changes: Structure summary - Version 1.3: 2023-02-01
Changes: Database references, Derived calculations
