Download MendeleyThe Crystal Structure of Lin0861 from Listeria innocua to 2.8A
Stein, A.J., Rakowski, E., Feldmann, B., Joachimiak, A.To be published.
3O60
The Crystal Structure of Lin0861 from Listeria innocua to 2.8A
- PDB DOI: https://doi.org/10.2210/pdb3O60/pdb
- Classification: Structural Genomics, Unknown function
- Organism(s): Listeria innocua
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-07-28 Released: 2010-09-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.246
- R-Value Work: 0.220
- R-Value Observed: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lin0861 protein | 185 | Listeria innocua | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q92DF2 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)) Explore Q92DF2 Go to UniProtKB: Q92DF2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q92DF2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth B], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.246
- R-Value Work: 0.220
- R-Value Observed: 0.217
- Space Group: P 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.457 | α = 90 |
| b = 95.457 | β = 90 |
| c = 96.84 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | phasing |
| SHELX | phasing |
| MLPHARE | phasing |
| DM | phasing |
| RESOLVE | phasing |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2010-09-29 Deposition Author(s): Stein, A.J., Rakowski, E., Feldmann, B., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-09-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-08
Changes: Refinement description
