3O0Y

The crystal structure of the putative lipoprotein from Colwellia psychrerythraea

PDB DOI: https://doi.org/10.2210/pdb3O0Y/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Colwellia psychrerythraea 34H
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2010-07-20 Released: 2010-09-22
Deposition Author(s): Zhang, R., Chhor, G., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.185
R-Value Work: 0.146
R-Value Observed: 0.148

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

The crystal structure of the putative lipoprotein from Colwellia psychrerythraea

Zhang, R., Chhor, G., Cobb, G., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 205.82 kDa
Atom Count: 16,338
Modelled Residue Count: 1,755
Deposited Residue Count: 1,827
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
lipoprotein	A, B, C	609	Colwellia psychrerythraea 34H	Mutation(s): 0 Gene Names: CPS_3202
UniProt
Find proteins for Q47Z72 (Colwellia psychrerythraea (strain 34H / ATCC BAA-681)) Explore Q47Z72 Go to UniProtKB: Q47Z72
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q47Z72
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain K [auth B] SDF format, chain G [auth A] MOL2 format, chain F [auth A] MOL2 format, chain K [auth B] MOL2 format, chain G [auth A]	F [auth A], G [auth A], K [auth B]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain K [auth B] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain K [auth B]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain O [auth C] SDF format, chain P [auth C] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain O [auth C] MOL2 format, chain P [auth C]	D [auth A] E [auth A] I [auth B] J [auth B] O [auth C] D [auth A], E [auth A], I [auth B], J [auth B], O [auth C], P [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain O [auth C] Focus chain P [auth C] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain O [auth C] Focus chain P [auth C]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain N [auth B] SDF format, chain T [auth C] SDF format, chain H [auth A] SDF format, chain L [auth B] SDF format, chain Q [auth C] SDF format, chain R [auth C] SDF format, chain S [auth C] MOL2 format, chain M [auth B] MOL2 format, chain N [auth B] MOL2 format, chain T [auth C] MOL2 format, chain H [auth A] MOL2 format, chain L [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain R [auth C] MOL2 format, chain S [auth C]	H [auth A] L [auth B] M [auth B] N [auth B] Q [auth C] H [auth A], L [auth B], M [auth B], N [auth B], Q [auth C], R [auth C], S [auth C], T [auth C]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain S [auth C] Focus chain T [auth C] Interactions & Density Focus chain H [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain S [auth C] Focus chain T [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.185
R-Value Work: 0.146
R-Value Observed: 0.148
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.954	α = 114.32
b = 94.471	β = 91.11
c = 93.894	γ = 100.43

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-09-22

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2010-09-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations