Download MendeleyCrystal structure of a rubisco-like protein from Burkholderia fungorum
Fedorov, A.A., Fedorov, E.V., Imker, H.J., Gerlt, J.A., Almo, S.C.To be published.
3NWR
Crystal structure of a rubisco-like protein from Burkholderia fungorum
- PDB DOI: https://doi.org/10.2210/pdb3NWR/pdb
- Classification: LYASE
- Organism(s): Paraburkholderia fungorum
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-07-10 Released: 2010-07-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.188
- R-Value Work: 0.173
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| A rubisco-like protein | 432 | Paraburkholderia fungorum | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for D9N172 (Paraburkholderia fungorum) Explore D9N172 Go to UniProtKB: D9N172 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D9N172 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | E [auth A], F [auth A], G [auth A], H [auth A], I [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KCX Query on KCX | A | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.188
- R-Value Work: 0.173
- R-Value Observed: 0.174
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.255 | α = 90 |
| b = 130.917 | β = 90 |
| c = 101.452 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| BALBES | phasing |
| PHENIX | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2010-07-28 Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Imker, H.J., Gerlt, J.A., Almo, S.C.
Revision History (Full details and data files)
- Version 1.0: 2010-07-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
